The barley gene families database

The barley gene family database (BGFD) is a database that collects 77 predicted barley gene families comprising of 5,593 genes. BGFD integrates multi-omics datasets designed to represent comprehensive annotations, including basic information, gene structure and conserved motif analysis, syntenic analysis, phylogenetic relationships, expression patterns and genetic variation of barley genes, and related publications.

—— Gene Families ——

14-3-3 AAAP ABC AHL ALDHs AMT1 b5 BURP Caleosins CDPK CIPKs class-III CNGCs CYP DBB EXO70 Expansins F-Box GSTs Hsp20 HSP70s IQD LRR-RLK LYPs MAPK MAPKK MAPKKK MAPKKKK MBOAT MIP MLO Myosin NBS-LRR PHT Phytocyanins PLD PP2C TCS TPS U-box

14-3-3

As highly conserved, dimeric, small acidic proteins, the 14-3-3 proteins existing in all investigated eukaryotic species. The 14-3-3 genes were first isolated from bovine brain, which were named on the strength of fraction number in DEAE-cellulose chromatography and migration position after starch gel electrophoresis.

Transcription Factor Families

Alfin-like AP2/ERF ARF B3 bHLH bZIP BZR C2C2-YABBY C3HC4 CBFB-NFYA CBFD-NFYB CCH CO-like CPP Dof EIL FAR1 GATA GRAS GRF HD-ZIP HSF LBD MADS mTERF NAC NLP OFP R2R3-MYB SAURs SBP TCP Tify Trihelix Whirly WOX WRKY

Alfin-like

Alfin-like (AL) transcription factors family, a small plant-specific gene family, are involved in root growth and abiotic stress response. The Alfin-like factors family has been identified for the first time in alfalfa (Medicago sativa) as a 7S storage protein.

How to Cite:

Li Tingting, Bian Jianxin, Tang Minqiang, Shangguan Hongbin, Zeng Yan, Luo Ruihan, Sun Huifan, Ke Qinglin, Nie Xiaojun, Li Yihan, and Cui Licao. (2022) BGFD: an integrated multi-omics database of barley gene families. BMC Plant Biology 22: 454.